Issue № 3 |
Original research |
pdf-version |
Shitikov Vladimir Kirillovich | DSc, Samara Federal Research Scientifc Center RAS, Institute of Ecology of the Volga River Basin of the Russian Academy of Science, 445003, Togliatty, Komzin st., 10, stok1946@gmail.com |
Zinchenko Tatyana Dmitrievna | DSc, Samara Federal Research Scientifc Center RAS, Institute of Ecology of the Volga River Basin of the Russian Academy of Science, 445003, Togliatty, Komzin st., 10, zinchenko.tdz@yandex.ru |
Keywords: plain rivers macrozoobenthos metacommunity ecology dark diversity species traits Bayesian model classification algorithms |
Summary: The results of using a unified Bayesian model to estimate components of species diversity on the example of bottom communities of small and medium-sized plain rivers are considered. The model was built using data on the occurrence of 147 macrozoobenthos taxa in 132 sections of watercourses in the Middle and Lower Volga basin. Estimates of ecological affinity for the phenomenon of "dark diversity" obtained by two logistic regression models were calculated and interpreted: for each species according to their 4 main biological properties and for each site according to 7 abiotic factors. The suitability of each species for each site was also estimated, it was calculated as the standardised deviation of the frequencies of co-occurring species from the expected probabilities according to a hypergeometric distribution. Based on these model estimates, unified (pooled) estimates of the probability Pij of detecting the i-th species at the j-th site were calculated. The accuracy and efficiency of the constructed model are reviewed, as well as suggestions for improving its quality are made © Petrozavodsk State University |
Received on: 14 August 2023 Published on: 09 October 2023 |
Bickford D., Lohman D. J., Sodhi N. S., Ng P. K. L., Meier R., Winker K., Ingram K. K., Das I. Cryptic species as a window on diversity and conservation, Trends Ecol Evol. 2007. Vol. 22, No. 3. P. 148–155. DOI: 10.1016/j.tree.2006.11.004
Carmona C. P., Pärtel M. Estimating probabilistic site-specific species pools and dark diversity from coocurrence data, Global Ecology and Biogeography. 2021. Vol. 30, No. 1. P. 316–326. DOI: 10.1111/geb.13203
Fujinuma J., Pärtel M. Decomposing dark diversity affinities of species and sites using Bayesian method: What accounts for absences of species at suitable sites?, Methods in Ecology and Evolution. 2023. P. 1–12. DOI: 10.1111/2041-210X.14109
Golovatyuk L. V. Shitikov V. K. Zinchenko T. D. Estimation of the zonal distribution of species of bottom communities in lowland rivers of the Middle and Lower Volga Basin, Povolzhskiy ekologicheskiy zhurnal. 2017. No. 4. C. 335–345.
Golovatyuk L. V. Zinchenko T. D. Shitikov V. K. Geographical aspects of spatial distribution of biodiversity of benthic communities of the Middle and Lower Volga region, Principy ekologii. 2021. No. 2. P. 38–53. DOI: 10.15393/j1.art.2021.11122
Keddy P. A. A pragmatic approach to functional ecology, Functional Ecology. 1992. Vol. 6. P. 621–626.
Klimesova J., Klimes L. Bud banks and their role in vegetative regeneration – a literature review and proposal for simple classification and assessment, Perspectives in Plant Ecology, Evolution and Systematics. 2007. Vol. 8. P. 115–129.
Leibold M. A., Mikkelson G. M. Coherence, species turnover, and boundary clumping: elements of meta-community structure, Oikos. 2002. Vol. 97. P. 237–250.
Ovaskainen O., Abrego N. Species Distribution Modelling: With Applications in R. Cambridge: Cambridge Univ. Press, 2020. 370 p.
Pärtel M., Szava-Kovats R., Zobel M. Community completeness: linking local and dark diversity within the species pool concept, Folia Geobotanica. 2013. Vol. 48, No. 3. P. 307–317. DOI: 10.1007/s12224-013-9169-x
Pärtel M., Szava-Kovats R., Zobel M. Dark diversity: shedding light on absent species, Trends in Ecology and Evolution. 2011. Vol. 26. P. 124–128.
Rabinowitz D. Seven forms of rarity, The biological aspects of rare plant conservation. New York: John Wiley & Sons Ltd, 1981. P. 205–217.
Shitikov V. K. Zinchenko T. D. Golovatyuk L. V. Models of joint distribution of species on the example of benthic communities from small rivers of the Volga Basin, Zhurnal obschey biologii. 2021. T. 82, No. 2. P. 143–154.
Vellend M. Розенберг Г. С., Шитиков В. К., Зинченко Т. Д. Review: Велленд М. Теория экологических сообществ. Принстон; Оксфорд: Изд-во Принстонского ун-та, 2016. 229 c. // Журнал общей биологии. 2020. Т. 81, № 5. С. 394–400. DOI: 10.31857/S0044459620050061.
Zinchenko T. D. Ecological and faunistic characteristics of chironomids (Diptera, Chironomidae) of small rivers of the Middle and Lower Volga basin (Atlas). Tol'yatti: Kassandra, 2011. 258 p. URL: http://www.ievbras.ru/books/books.html (data obrascheniya: 01.06.2023).